BLAT - BLAST like Alignment tool | Tool name | BLAT - BLAST like Alignment tool |
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| URL | http://genome.ucsc.edu/cgi-bin/hgBlat?command=start |
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| Important features | |
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| Citations | Kent WJ. BLAT--the BLAST-like alignment tool. Genome Res. 2002
Apr;12(4):656-64. PubMed PMID: 11932250; PubMed Central PMCID: PMC187518.
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| Year of publication | 2002 |
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| Rank by usage frequency | 99 |
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| Comments | 1) Link to UCSC Genome browser is given. 2) Splice Sites are marked in the sequence itself, with light blue colour. |
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| Function | Splice site details, Alignment, Species, Finds alternative splicing in human, Finds alternative splicing in rat, Finds alternative splicing in mouse, Finds alternative splicing in chicken, Finds alternative splicing in zebrafish, Finds alternative splicing in dog, Finds alternative splicing in cow, Finds alternative splicing in Drosophila, Finds alternative splicing in other species |
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| Category | |
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| Input file format | DNA sequencein Fasta format |
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| Output file format | |
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| Limitation | Only DNA sequences of 25,000 or fewer bases and protein or translated sequence of 10000 or fewer letters will be processed. Up to 25 sequences can be submitted at the same time. The total limit for multiple sequence submissions is 50,000 bases or 25,000 letters. |
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